PPDB

PPDB	The Plant Proteome Database

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AT3G22330.1 putative mitochondrial RNA helicase 2

Lab Annot.

DEAD box RNA helicase (RH53) (PMH2) - Intron II splicing
Mapman: 27.5* RNA.DEAD/DEAH BOX helicase

Curated Location

mitochondria (Pubmed: 19960362 17951454 )

TAIR curated location: mitochondrion14671022,11743115

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G26742.1 11 Arabidopsis thaliana 1E-161 407 59 74 752 (590) C
AT5G26742.2 11 Arabidopsis thaliana 2E-161 407 59 74 780 (620) C
AT5G26742.3 11 Arabidopsis thaliana 9E-152 344 63 77 549 (408) S
Os07g05050.1 7 Oryza sativa 0 572 58 72 0 (0) C
Os12g41715.1 7 Oryza sativa 0 377 70 89 3 (3) M
Os07g05050.2 7 Oryza sativa 0 572 56 69 0 (0) C
GRMZM2G107984_P01 3.21 Zea mays 0 379 70 90 10 (10) M
v1_GRMZM2G107984_P02 4a53 Zea mays 0 379 70 90 11 (11) M
v1_GRMZM2G107984_P01 4a53 Zea mays 0 379 70 90 11 (11) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA_19(2) CMS1(1) DEAD(1) ERCC3_RAD25_C(1) Helicase_C(2) ResIII(1)
TargetP:	Mitochondria (Class 3 C0.098; M0.635; S0.044; _0.045)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	616 aa (-cTP 581)
Molecular Weight	65.36 kDA(-cTP )
PI	9.34(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
2290	Detail								[A. thaliana]		Clp C1 TRAP
2297	Detail								[A. thaliana]		Clp C1 WT
2299	Detail								[A. thaliana]		Clp C1 TRAP
2301	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

MitoDB(Mitochondrial proteome)
16287169(Cell Wall proteome)
15496452(nucleolus)
18931141(peroxisomes- high&low purity (cell culture))
19334764(plasma membrane (cell culture))
20706207(contaminants cell cycle interactome (cell culture))
19114538(guard cells Arabidopsis leaf)
21311031(mitochondria)
21841088(mitochondria (2DE native gel))
21472856(mitochondria-LC-MS/MS-uncurated)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data