PPDB

The Plant Proteome Database

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AT3G22320.1   Eukaryotic rpb5 RNA polymerase subunit family protein

Lab Annot. RNA polymerase ATRPABC24.3 ( POLYMERASE I, II AND III 24.3 KDA SUBUNIT);
Mapman: 27.2 RNA.transcription
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G57980.1 11Arabidopsis thaliana1E-5520643670 (0)_
AT2G41340.1 11Arabidopsis thaliana5E-4020137630 (0)_
AT3G57080.1 11Arabidopsis thaliana5E-3620436580 (0)_
Os01g59140.1 7Oryza sativa1E-10320668850 (0)_
Os04g41040.1 7Oryza sativa5E-9920564823 (3)M
Os04g41040.2 7Oryza sativa2E-6816557792 (2)M
v1_GRMZM2G476009_P01 4a53Zea mays1E-103202698420 (20)_
GRMZM2G476009_P01 3.21Zea mays1E-103202698414 (2)_
Zm00001eb369320_P001 agpv5Zea mays1E-10320269840 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF3557(1) RNA_pol_Rpb5_C(3) RNA_pol_Rpb5_N(1)
TargetP: Cytoplasm (Class 5 C0.037; M0.518; S0.054; _0.599)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 205 aa (-cTP 187)
Molecular Weight 24.30 kDA(-cTP )
PI 9.56(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1723Detail        [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help