PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G21720.1   isocitrate lyase
Lab Annot. isocitrate lyase
Mapman: 6.9 gluconeogenese/ glyoxylate cycle.isocitrate lyase
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G77060.1 11Arabidopsis thaliana6E-10954358128 (84)C
AT1G21440.2 11Arabidopsis thaliana9E-109840550 (0)C
AT1G21440.1 11Arabidopsis thaliana9E-10984055296 (194)C
Os07g34520.1 7Oryza sativa057677870 (0)_
Os07g34520.2 7Oryza sativa056577870 (0)_
Os07g34520.3 7Oryza sativa054578880 (0)_
GRMZM2G056369_P01 3.21Zea mays057777870 (0)_
Zm00001eb323090_P001 agpv5Zea mays057777870 (0)_
v1_GRMZM2G056369_P01 4a53Zea mays057777870 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ICL(1) PEP_mutase(2)
TargetP: Cytoplasm (Class 4 C0.500; M0.013; S0.077; _0.855)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 576 aa (-cTP 555)
Molecular Weight 64.24 kDA(-cTP )
PI 6.72(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1756Detail       leaf [A. thaliana] total leaf tissue Col_0
1759Detail       leaf [A. thaliana] total leaf tissue Col_0
1930Detail       leaf [A. thaliana] total leaf tissue Col_0 Wild-type
1931Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
1932Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2268Detail       seedlings [A. thaliana] total tissue wild-type
2269Detail       seedlings [A. thaliana] total tissue wild-type
2270Detail       seedlings [A. thaliana] total tissue wild-type
2271Detail       seedlings [A. thaliana] total tissue wild-type
2272Detail       seedlings [A. thaliana] total tissue wild-type
2273Detail       seedlings [A. thaliana] total tissue wild-type
2274Detail       seedlings [A. thaliana] total tissue wild-type
2275Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 11402211,12068122,15047896,16679420,17028149(seed-all-Jobpapers)
17828791(total leaf)
18599647(seed proteome)
19334764(plasma membrane (cell culture))
21311031(mitochondria)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help