PPDB

 The Plant Proteome Database

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AT3G21500.1   1-deoxy-D-xylulose 5-phosphate synthase 1
Lab Annot. 1-deoxy-D-xylulose 5-phosphate synthase 1 (DXS; previously cla)
Mapman: 16.1.1.1 secondary metabolism.isoprenoids.non-mevalonate pathway.DXS
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G21500.2 11Arabidopsis thaliana064199991 (1)C
AT3G21500.3 11Arabidopsis thaliana062999990 (0)C
AT4G15560.1 11Arabidopsis thaliana06727884173 (82)C
Os05g33840.1 7Oryza sativa0612778416 (16)C
Os07g09190.1 7Oryza sativa062566780 (0)C
Os06g05100.1 7Oryza sativa064151680 (0)C
GRMZM2G137151_P03 3.21Zea mays0361818845 (15)_
v1_GRMZM2G137151_P03 4a53Zea mays0361818816 (16)_
GRMZM2G137151_P02 3.21Zea mays0360818840 (11)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DXP_synthase_N(2) E1_dh(1) PFOR_II(1) TPP_enzyme_C(1) Transket_pyr(1) Transketol
TargetP: Chloroplast (Class 5 C0.312; M0.287; S0.082; _0.036)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 640 aa (-cTP 593)
Molecular Weight 69.71 kDA(-cTP 64.27)
PI 8.17(-cTP 6.62)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1758Detail       leaf [A. thaliana] total leaf tissue DXS_Flag+fosmidomycin

* For details about the exprimental sources click here.

Published Proteomics Data

 21533090(plasmodesmata-crude)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help