PPDB

 The Plant Proteome Database

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AT3G21140.1   Pyridoxamine 5'-phosphate oxidase family protein
Lab Annot. Pyridoxamine 5'-phosphate oxidase protein
Mapman: 18.20* Co-factor and vitamine metabolism.vitamin b6
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G51560.1 11Arabidopsis thaliana0391778447 (23)C
AT3G03890.1 11Arabidopsis thaliana1E-212802747122 (75)C
AT3G03890.2 11Arabidopsis thaliana3E-21250284785 (45)C
Os08g40570.1 7Oryza sativa6E-16326182910 (0)C
Os02g05500.1 7Oryza sativa7E-15226177870 (0)C
Os07g38620.1 7Oryza sativa4E-15110385811 (11)M
GRMZM2G074114_P02 3.21Zea mays6E-160264809018 (18)C
Zm00001eb035800_P002 agpv5Zea mays6E-16026480900 (0)C
v1_GRMZM2G074114_P02 4a53Zea mays6E-160264809015 (15)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Putative_PNPOx(1) Pyrid_oxidase_2(1)
TargetP: Chloroplast (Class 2 C0.934; M0.038; S0.006; _0.166)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 387 aa (-cTP 341) (-lTP 248)
Molecular Weight 42.85 kDA(-cTP 37.68)(-lTP 28.16)
PI 6.44(-cTP 5.97)(-lTP 6.213)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1175Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1635Detail       leaf [A. thaliana] Stroma stromaclpt1-2
1640Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1932Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
2120Detail       leaf [A. thaliana] Stroma stromacGep
2215Detail       leaf [A. thaliana] total leaf tissue Clp P5 trap st
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2300Detail        [A. thaliana] Clp C1 TRAP
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 19546170(mature pollen grains)
20706207(cell cycle interactome (cell culture))
21173025(root proteome)
21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help