PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G20930.1   RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot. ORRM1 (editing factor)
Mapman: 27 RNA
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G20930.2 11Arabidopsis thaliana037998980 (0)C
AT1G32580.1 11Arabidopsis thaliana2E-209442690 (0)C
AT1G73530.1 11Arabidopsis thaliana4E-2079507412 (12)C
Os02g49820.1 7Oryza sativa2E-11831856710 (0)C
Os03g17060.1 7Oryza sativa8E-239748650 (0)C
Os04g49440.3 7Oryza sativa2E-217945780 (0)C
v1_GRMZM2G044422_P03 4a53Zea mays3E-11931456728 (8)C
Zm00001eb253560_P003 agpv5Zea mays3E-11931456720 (0)C
GRMZM5G899787_P02 3.21Zea mays3E-119314567212 (12)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Inhibitor_I9(2) RRM_1(1) RRM_7(1)
TargetP: Chloroplast (Class 1 C0.968; M0.013; S0.013; _0.054)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 374 aa (-cTP 320)
Molecular Weight 41.61 kDA(-cTP 35.61)
PI 5.95(-cTP 5.54)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1752Detail        [A. thaliana] ORMM1
1755Detail        [A. thaliana] ORMM1

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help