PPDB

The Plant Proteome Database

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AT3G20890.1   RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot. RNA-binding (RRM/RBD/RNP motifs) protein
Mapman: 27.4 RNA.RNA binding
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G20890.2 11Arabidopsis thaliana6E-14422990920 (0)S
AT5G66010.1 11Arabidopsis thaliana3E-6427742580 (0)M
AT5G66010.2 11Arabidopsis thaliana5E-3417538570 (0)M
Os11g03890.1 7Oryza sativa4E-7228545582 (2)_
Os12g03710.1 7Oryza sativa8E-6927643560 (0)_
Os02g58600.1 7Oryza sativa5E-2411149580 (0)_
GRMZM2G159028_P01 3.21Zea mays2E-74288445828 (16)_
v1_GRMZM2G159028_P01 4a53Zea mays2E-74288445841 (41)_
Zm00001eb297160_P002 agpv5Zea mays2E-7428844580 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RRM_1(2)
TargetP: Cytoplasm (Class 2 C0.068; M0.153; S0.065; _0.892)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 292 aa (-cTP 235)
Molecular Weight 31.78 kDA(-cTP )
PI 6.20(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt

* For details about the exprimental sources click here.

Published Proteomics Data

19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help