PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G20510.1   Transmembrane proteins 14C

Lab Annot. Transmembrane proteins 14C
Mapman: 35.2 not assigned.unknown
Curated Location
TAIR curated location: nucleus & cytoplasm15610358
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G50740.1 11Arabidopsis thaliana1E-6411981890 (0)S
AT3G57280.1 11Arabidopsis thaliana8E-19117395856 (55)C
AT2G26240.1 11Arabidopsis thaliana2E-1110041586 (6)S
Os03g37090.1 7Oryza sativa9E-3614352649 (9)_
Os03g38790.1 7Oryza sativa2E-2512352660 (0)_
Os04g39450.1 7Oryza sativa1E-1911738520 (0)M
Zm00001eb048800_P001 agpv5Zea mays2E-4311963820 (0)_
GRMZM2G083091_P01 3.21Zea mays2E-4311963823 (3)_
v1_GRMZM2G083091_P01 4a53Zea mays3E-4311963821 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF1516(1) DUF2157(1) RseC_MucC(2) Tmemb_14(1)
TargetP: Cytoplasm (Class 4 C0.032; M0.184; S0.329; _0.552)
Predotar:
Subcel. Location:
TM-HMM prediction: 4 TMs
Aramemnon: 4 TMs
TAT position:
Length 119 aa (-cTP 69)
Molecular Weight 12.51 kDA(-cTP )
PI 9.70(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1619Detail        [A. thaliana] m48

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help