PPDB

The Plant Proteome Database

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AT3G20440.3   Alpha amylase family protein

Lab Annot. alpha-amylase- branching enzyme 1 ((BE1/EMB2729)
Mapman: 2.1.2.3 major CHO metabolism.synthesis.starch.starch branching
Curated Location plastid (Pubmed: 23198870 20377688 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links PeptideAtlas   POGS   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G20440.2 11Arabidopsis thaliana0906989822 (7)C
AT3G20440.1 11Arabidopsis thaliana0906949430 (18)C
AT2G36390.1 11Arabidopsis thaliana1E-1445514162354 (267)C
Os06g26234.1 7Oryza sativa0860647920 (20)C
Os06g26234.2 7Oryza sativa0860647920 (20)C
Os06g26234.3 7Oryza sativa0788657920 (20)M
Zm00001eb357830_P001 agpv5Zea mays083963800 (0)C
GRMZM2G005298_P01 3.21Zea mays0839638034 (34)C
v1_GRMZM2G005298_P01 4a53Zea mays0839638024 (24)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Alpha-amylase(1) Alpha-amylase_C(2) CBM_48(2)
TargetP: Chloroplast (Class 4 C0.643; M0.296; S0.034; _0.102)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 897 aa (-cTP 848)
Molecular Weight 103.22 kDA(-cTP 97.59)
PI 5.77(-cTP 5.47)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19995723(chloroplast reference proteome)

Comparative Proteomics Data


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