PPDB

PPDB	The Plant Proteome Database

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AT3G20370.1 TRAF-like family protein

Lab Annot.

meprin and TRAF homology domain-containing protein / MATH domain-containing protein
Mapman: 35.1 not assigned.no ontology

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G20370.2 11 Arabidopsis thaliana 0 338 99 100 0 (0) S
AT3G20360.1 11 Arabidopsis thaliana 2E-139 386 56 68 0 (0) S
AT3G20380.1 11 Arabidopsis thaliana 1E-135 382 56 70 0 (0) S
Os12g30540.1 7 Oryza sativa 3E-10 141 29 49 28 (28) _
Os01g56490.1 7 Oryza sativa 7E-10 131 32 53 1 (1) _
Os10g33830.1 7 Oryza sativa 2E-09 250 24 46 0 (0) C
Zm00001eb408670_P002 agpv5 Zea mays 9E-11 176 31 46 0 (0) _
Zm00001eb408670_P001 agpv5 Zea mays 2E-10 141 31 48 0 (0) _
v1_GRMZM2G379706_P03 4a53 Zea mays 3E-10 157 28 50 1 (1) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	MATH(2)
TargetP:	Secreted (Class 1 C0.001; M0.081; S0.965; _0.060)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	379 aa (-cTP 358)
Molecular Weight	43.45 kDA(-cTP )
PI	6.17(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1530	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	wild-type (rep. 1)
1531	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	wild-type (rep. 1)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1757	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag
1758	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag+fosmidomycin
1932	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag
2245	Detail								seedlings [A. thaliana]	total tissue	wild-type
2246	Detail								seedlings [A. thaliana]	total tissue	gfs9
2247	Detail								seedlings [A. thaliana]	total tissue	atg5
2248	Detail								seedlings [A. thaliana]	total tissue	wild-type
2250	Detail								seedlings [A. thaliana]	total tissue	atg5
2251	Detail								seedlings [A. thaliana]	total tissue	wild-type
2252	Detail								seedlings [A. thaliana]	total tissue	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

17407188(cotyledon)
17293592(total seedlings û light and dark grown)
17432890(leaf total membranes)
17660356(tonoplast (Brassica oleracea buds))
18796151(cell wall (hypocotyl))
19525416(leaf (wt and clpr4-1 mutant))
WallDB-E.Jamet(cell wall reference proteome)
21533090(plasmodesmata-crude)
21325567(root-proteome (wt & det3))
21173025(root proteome)
21109274(cellwall-glycoproteome)

Comparative Proteomics Data