PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT3G20300.1 extracellular ligand-gated ion channel protein (DUF3537)

Lab Annot.

Protein of unknown function (DUF3537)
Mapman: 27.3.3 RNA.regulation of transcription.AP2/EREBP, APETALA2/Ethylene-responsive element binding protein family

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G50630.1 11 Arabidopsis thaliana 0 465 77 85 0 (0) _
AT1G50630.2 11 Arabidopsis thaliana 0 420 76 83 0 (0) _
AT4G22270.2 11 Arabidopsis thaliana 6E-148 441 53 71 0 (0) _
Os06g42850.1 7 Oryza sativa 2E-133 430 50 67 0 (0) _
Os04g37520.1 7 Oryza sativa 2E-118 436 49 64 0 (0) C
Os02g35830.1 7 Oryza sativa 7E-104 442 45 61 0 (0) C
Zm00001eb387500_P001 agpv5 Zea mays 2E-138 432 49 66 0 (0) _
GRMZM2G104347_P01 3.21 Zea mays 2E-138 432 49 66 0 (0) _
v1_GRMZM2G104347_P01 4a53 Zea mays 2E-138 432 49 66 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF3537(1)
TargetP:	Cytoplasm (Class 2 C0.069; M0.220; S0.010; _0.903)
Predotar:
Subcel. Location:
TM-HMM prediction:	6 TMs
Aramemnon:	7 TMs
TAT position:
Length	452 aa (-cTP 443)
Molecular Weight	51.33 kDA(-cTP )
PI	6.50(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

19114538(guard cells Arabidopsis leaf)

Comparative Proteomics Data