PPDB

PPDB	The Plant Proteome Database

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AT3G20250.1 pumilio 5

Lab Annot.

pumilio-family RNA-binding protein
Mapman: 35.1.12 not assigned.no ontology.pumilio/Puf RNA-binding domain-containing protein

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G20250.3 11 Arabidopsis thaliana 0 936 96 96 0 (0) _
AT3G20250.2 11 Arabidopsis thaliana 0 936 96 96 0 (0) _
AT4G25880.1 11 Arabidopsis thaliana 1E-179 929 39 54 0 (0) C
Os08g40830.3 7 Oryza sativa 0 571 53 65 0 (0) _
Os08g40830.1 7 Oryza sativa 2E-172 561 52 65 0 (0) _
Os08g40830.2 7 Oryza sativa 2E-172 561 52 65 0 (0) _
Zm00001eb035700_P005 agpv5 Zea mays 9E-172 569 50 64 0 (0) _
Zm00001eb035700_P004 agpv5 Zea mays 9E-172 569 50 64 0 (0) _
v1_GRMZM2G449123_P10 4a53 Zea mays 5E-171 569 50 64 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF2524(2) DUF445(2) LOB(3) PUF(8) Ribosomal_S7(3) Sacchrp_dh_NADP(2)
TargetP:	Cytoplasm (Class 3 C0.245; M0.105; S0.036; _0.781)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	913 aa (-cTP 854)
Molecular Weight	101.61 kDA(-cTP )
PI	5.57(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
420	Detail								leaf [A. thaliana]	chloroplast stroma	clpR1-stop (EMS)
1199	Detail								leaf [A. thaliana]	co-IP OEC23 stroma	clpr2-1
1450	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 3)
2250	Detail								seedlings [A. thaliana]	total tissue	atg5
2305	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

15539469(vacuole)
19429840(ubiquitinated or associated with ubiquitinated proteins (seedlings))
19376835(leaf phosphoproteins)
22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data