PPDB

The Plant Proteome Database

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AT3G20250.1   pumilio 5

Lab Annot. pumilio-family RNA-binding protein
Mapman: 35.1.12 not assigned.no ontology.pumilio/Puf RNA-binding domain-containing protein
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G20250.3 11Arabidopsis thaliana093696960 (0)_
AT3G20250.2 11Arabidopsis thaliana093696960 (0)_
AT4G25880.1 11Arabidopsis thaliana1E-17992939540 (0)C
Os08g40830.3 7Oryza sativa057153650 (0)_
Os08g40830.1 7Oryza sativa2E-17256152650 (0)_
Os08g40830.2 7Oryza sativa2E-17256152650 (0)_
Zm00001eb035700_P005 agpv5Zea mays9E-17256950640 (0)_
Zm00001eb035700_P004 agpv5Zea mays9E-17256950640 (0)_
v1_GRMZM2G449123_P10 4a53Zea mays5E-17156950640 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF2524(2) DUF445(2) LOB(3) PUF(8) Ribosomal_S7(3) Sacchrp_dh_NADP(2)
TargetP: Cytoplasm (Class 3 C0.245; M0.105; S0.036; _0.781)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 913 aa (-cTP 854)
Molecular Weight 101.61 kDA(-cTP )
PI 5.57(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
420Detail       leaf [A. thaliana] chloroplast stromaclpR1-stop (EMS)
1199Detail       leaf [A. thaliana] co-IP OEC23 stromaclpr2-1
1450Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
2250Detail       seedlings [A. thaliana] total tissue atg5
2305Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

15539469(vacuole)
19429840(ubiquitinated or associated with ubiquitinated proteins (seedlings))
19376835(leaf phosphoproteins)
22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help