PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G20230.1   Ribosomal L18p/L5e family protein
Lab Annot. 50S ribosomal protein L18 (RPL18)
Mapman: 29.2.1.1.3.2.18 protein.synthesis.ribosomal protein.prokaryotic.unknown organellar.50S subunit.L18
Curated Location plastid ribosome (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G08845.3 11Arabidopsis thaliana2E-2711342690 (0)M
AT1G08845.1 11Arabidopsis thaliana2E-2711342690 (0)M
AT1G08845.2 11Arabidopsis thaliana3E-2711342690 (0)S
Os02g46440.2 7Oryza sativa3E-7615471844 (4)C
Os02g46440.3 7Oryza sativa3E-7615471844 (4)C
Os02g46440.1 7Oryza sativa3E-7615471844 (4)C
v1_GRMZM2G126580_P01 4a53Zea mays5E-76133789111 (11)C
Zm00001eb251090_P001 agpv5Zea mays5E-7613378910 (0)C
GRMZM2G126580_P01 3.21Zea mays5E-76133789121 (21)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Ribosomal_L18p(1)
TargetP: Chloroplast (Class 2 C0.772; M0.038; S0.030; _0.094)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 187 aa (-cTP 119)
Molecular Weight 21.12 kDA(-cTP 13.64)
PI 10.25(-cTP 10.06)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

 20423899(chloroplast)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help