PPDB

The Plant Proteome Database

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AT3G19990.1   E3 ubiquitin-protein ligase

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G19990.2 11Arabidopsis thaliana04251001000 (0)C
Os02g58150.1 7Oryza sativa042158760 (0)_
Os02g58170.1 7Oryza sativa5E-13235356720 (0)_
v1_GRMZM2G145133_P01 4a53Zea mays2E-17640757763 (3)_
Zm00001eb259360_P002 agpv5Zea mays2E-17640757760 (0)_
GRMZM2G145133_P01 3.21Zea mays2E-17640757762 (2)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: TPR_MalT(1)
TargetP: Cytoplasm (Class 2 C0.247; M0.030; S0.038; _0.891)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 425 aa (-cTP 403)
Molecular Weight 48.42 kDA(-cTP )
PI 5.40(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
180_181Detail       leaf [A. thaliana] chloroplast stromaclpr2-1
195_194Detail       leaf [A. thaliana] chloroplast stromaffc1-2
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1

* For details about the exprimental sources click here.

Published Proteomics Data

18633119(stroma)
18431481(chloroplast)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help