PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G19840.1   pre-mRNA-processing protein 40C

Lab Annot. pre-mRNA-processing protein 40C
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G44910.2 11Arabidopsis thaliana3E-3052227433 (2)C
AT1G44910.1 11Arabidopsis thaliana4E-3052227433 (2)C
AT3G19670.1 11Arabidopsis thaliana1E-2245126440 (0)_
Os10g34380.1 7Oryza sativa0808496512 (12)_
Zm00001eb221360_P003 agpv5Zea mays075949660 (0)_
Zm00001eb221360_P002 agpv5Zea mays3E-16743558770 (0)M
Zm00001eb221360_P001 agpv5Zea mays3E-16743558770 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: FF(5) Glyco_hyd_101C(2) RhoGAP-FF1(3) WW(2)
TargetP: Cytoplasm (Class 5 C0.535; M0.073; S0.005; _0.582)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 835 aa (-cTP 796)
Molecular Weight 92.81 kDA(-cTP )
PI 8.32(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

21533090(plasmodesmata-crude)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help