PPDB

 The Plant Proteome Database

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AT3G19770.1   Vacuolar sorting protein 9 (VPS9) domain-containing protein
Lab Annot. ATVPS9A (VACUOLAR PROTEIN SORTING 9A)
Mapman: 29.3.4.3 protein.targeting.secretory pathway.vacuole
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G19770.2 11Arabidopsis thaliana0384999913 (12)S
AT5G09320.1 11Arabidopsis thaliana045974831 (0)_
Os03g15650.1 7Oryza sativa5E-18043560750 (0)_
Os03g15650.3 7Oryza sativa4E-15138658740 (0)_
Os03g62580.1 7Oryza sativa8E-10128050730 (0)_
Zm00001eb398120_P005 agpv5Zea mays8E-17744459730 (0)_
v1_GRMZM2G119627_P01 4a53Zea mays8E-17744459731 (1)_
GRMZM2G119627_P01 3.21Zea mays8E-177444597328 (1)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF3446(2) DUF4688(2) DUF5601(1) VPS9(1)
TargetP: Cytoplasm (Class 2 C0.165; M0.144; S0.103; _0.826)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 520 aa (-cTP 474)
Molecular Weight 57.90 kDA(-cTP )
PI 4.82(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1421Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1494Detail       leaf [A. thaliana]  
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1552Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1553Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1557Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1572Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1576Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1580Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1582Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
2297Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

 17432890(leaf total membranes)
18463617(suspension cells-phosphorylated proteins)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19525416(leaf (wt and clpr4-1 mutant))
19253305(phosphoproteins (etiolated seedling))
19376835(leaf phosphoproteins)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

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