PPDB

The Plant Proteome Database

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AT3G19620.1   Glycosyl hydrolase family protein

Lab Annot. glycosyl hydrolase family 3 protein
Mapman: 10.6.2 cell wall.degradation.mannan-xylose-arabinose-fucose
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G64570.1 11Arabidopsis thaliana07775671148 (78)M
AT5G09730.1 11Arabidopsis thaliana078454691 (1)S
AT1G02640.1 11Arabidopsis thaliana076653681 (1)S
Os04g54810.1 7Oryza sativa0752587373 (73)S
Os11g44950.2 7Oryza sativa073655702 (2)M
Os02g51620.1 7Oryza sativa0747506622 (22)S
GRMZM2G136895_P01 3.21Zea mays0751597210 (10)S
v1_GRMZM2G136895_P01 4a53Zea mays0751597211 (11)S
Zm00001eb431850_P002 agpv5Zea mays075159720 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Fn3-like(1) Glyco_hydro_3(1) Glyco_hydro_3_C(1)
TargetP: Secreted (Class 1 C0.010; M0.070; S0.899; _0.017)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 781 aa (-cTP 736)
Molecular Weight 85.50 kDA(-cTP )
PI 8.77(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
2399Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1WTSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

15593128(Cell Wall proteome)
WallDB-E.Jamet(cell wall reference proteome)
21311031(mitochondria)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help