PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G19508.1   complex 1 protein%2C LYR family protein

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os01g24020.1 7Oryza sativa1E-277664780 (0)M
GRMZM2G052105_P01 3.21Zea mays4E-237656730 (0)M
Zm00001eb307960_P001 agpv5Zea mays4E-237656730 (0)M
v1_GRMZM2G052105_P01 4a53Zea mays4E-237656730 (0)M

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Complex1_LYR(1)
TargetP: Mitochondria (Class 1 C0.009; M0.909; S0.082; _0.063)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 81 aa (-cTP 62)
Molecular Weight 9.64 kDA(-cTP )
PI 9.07(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1651Detail       leaf [A. thaliana] plastoglobules plastoglobulewild-type
2005Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2007Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2317Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

22060019(phosphoproteome - N-starved seedlings)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help