PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G19240.1   Vacuolar import/degradation%2C Vid27-related protein

Lab Annot. dem protein-related
Mapman: 33.99 development.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G33400.1 11Arabidopsis thaliana062861772 (2)_
Os02g08190.1 7Oryza sativa060962757 (7)_
Os02g54780.1 7Oryza sativa060360740 (0)_
v1_GRMZM2G363474_P02 4a53Zea mays0675597220 (20)_
GRMZM2G363474_P01 3.21Zea mays067559724 (4)_
Zm00001eb206560_P001 agpv5Zea mays067559720 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Pox_RNA_Pol_19(1) SR-25(1) VID27(1) WD40(3)
TargetP: Cytoplasm (Class 2 C0.082; M0.172; S0.022; _0.895)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 648 aa (-cTP 571)
Molecular Weight 72.28 kDA(-cTP )
PI 5.49(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
2321Detail       leaf [A. thaliana]  

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help