PPDB

PPDB	The Plant Proteome Database

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AT3G19130.1 RNA-binding protein 47B

Lab Annot.

RNA-binding protein 47B (RBP47B)
Mapman: 28.99 DNA.unspecified

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G49600.1 11 Arabidopsis thaliana 0 372 77 84 492 (146) _
AT1G49600.2 11 Arabidopsis thaliana 0 338 77 85 0 (0) _
AT1G49600.3 11 Arabidopsis thaliana 0 338 77 85 0 (0) _
Os09g28810.1 7 Oryza sativa 8E-138 317 61 76 6 (6) _
Os04g37690.1 7 Oryza sativa 6E-124 318 57 75 4 (4) C
Os03g07800.1 7 Oryza sativa 4E-121 293 58 75 4 (4) _
Zm00001eb315240_P002 agpv5 Zea mays 2E-133 376 54 69 0 (0) _
v1_GRMZM2G467907_P01 4a53 Zea mays 3E-133 376 55 69 3 (3) _
GRMZM2G467907_P01 3.21 Zea mays 3E-133 376 55 69 2 (2) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Cas_Cas2CT1978(1) DUF1866(1) Nup35_RRM_2(1) PHM7_cyt(3) RRM_1(3) RRM_3(3) RRM_5(
TargetP:	Cytoplasm (Class 3 C0.296; M0.055; S0.073; _0.882)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	435 aa (-cTP 385)
Molecular Weight	48.12 kDA(-cTP )
PI	6.08(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
2219	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2286	Detail								[A. thaliana]		Clp C1 WT
2287	Detail								[A. thaliana]		Clp C1 WT
2288	Detail								[A. thaliana]		Clp C1 WT
2289	Detail								[A. thaliana]		Clp C1 TRAP
2290	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT
2299	Detail								[A. thaliana]		Clp C1 TRAP
2300	Detail								[A. thaliana]		Clp C1 TRAP
2301	Detail								[A. thaliana]		Clp C1 TRAP
2302	Detail								[A. thaliana]		Clp C1 WT
2303	Detail								[A. thaliana]		Clp C1 WT
2305	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19672695(oligo(dT) mRNA-binding proteins (cell culture))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data