PPDB

The Plant Proteome Database

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AT3G18790.1   pre-mRNA-splicing factor ISY1-like protein

Lab Annot. Isy1-like splicing family
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os02g39050.1 7Oryza sativa6E-13631165790 (0)_
Zm00001eb246450_P002 agpv5Zea mays8E-14331170830 (0)_
Zm00001eb246450_P001 agpv5Zea mays8E-14331170830 (0)_
v1_GRMZM2G024451_P01 4a53Zea mays8E-143311708310 (10)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: AAA_22(2) Atg31(1) Isy1(1)
TargetP: Cytoplasm (Class 2 C0.189; M0.133; S0.079; _0.809)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 300 aa (-cTP 297)
Molecular Weight 35.38 kDA(-cTP )
PI 6.41(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help