PPDB

PPDB	The Plant Proteome Database

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AT3G18600.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

Lab Annot.

DEAD box RNA helicase (RH51)
Mapman: 27.5* RNA.DEAD/DEAH BOX helicase

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G65900.1 11 Arabidopsis thaliana 0 460 67 84 0 (0) _
AT5G54910.1 11 Arabidopsis thaliana 5E-103 446 40 59 1 (1) _
AT5G05450.1 11 Arabidopsis thaliana 1E-87 465 36 57 0 (0) _
Os03g58810.1 7 Oryza sativa 0 490 61 78 0 (0) C
Os07g33340.1 7 Oryza sativa 1E-101 449 39 60 0 (0) M
Os06g34420.1 7 Oryza sativa 1E-101 260 59 79 0 (0) C
Zm00001eb053970_P001 agpv5 Zea mays 0 505 55 72 0 (0) C
Zm00001eb407490_P003 agpv5 Zea mays 0 563 52 68 0 (0) _
GRMZM5G897976_P01 3.21 Zea mays 0 490 63 78 8 (8) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA_22(1) DEAD(1) DUF4217(1) GLTP(2) Helicase_C(3) ResIII(1)
TargetP:	Cytoplasm (Class 2 C0.147; M0.093; S0.145; _0.887)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	568 aa (-cTP 566)
Molecular Weight	63.82 kDA(-cTP )
PI	9.30(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1758	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag+fosmidomycin
1931	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2015	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2320	Detail								[A. thaliana]	Thylakoids plastoglobule
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

15496452(nucleolus)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21166475(cytosolic-fractions-crude)
21433285(Crude microsomes cell_cultures)

Comparative Proteomics Data