PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G18580.1   Nucleic acid-binding%2C OB-fold-like protein

Lab Annot. single-strand-binding protein
Mapman: 27.3.99 RNA.regulation of transcription.unclassified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G11060.1 11Arabidopsis thaliana2E-2621729515 (0)M
Os01g45530.1 7Oryza sativa6E-72153668217 (17)M
Os05g43440.1 7Oryza sativa2E-2517429552 (2)M
Os05g43440.2 7Oryza sativa2E-2517429551 (1)M
Zm00001eb158710_P001 agpv5Zea mays5E-7222853690 (0)M
Zm00001eb158710_P002 agpv5Zea mays5E-7222853690 (0)M
GRMZM2G098305_P01 3.21Zea mays5E-7222853692 (2)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF4596(2) SSB(1)
TargetP: Mitochondria (Class 3 C0.181; M0.717; S0.028; _0.038)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 217 aa (-cTP 193)
Molecular Weight 24.21 kDA(-cTP )
PI 9.29(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
2297Detail        [A. thaliana] Clp C1 WT
2301Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
21841088(mitochondria (2DE native gel))
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help