PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G18430.1   Calcium-binding EF-hand family protein
Lab Annot. calcium-binding EF hand protein
Mapman: 30.3 signalling.calcium
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G18430.3 11Arabidopsis thaliana1E-1261751001000 (0)_
AT3G18430.2 11Arabidopsis thaliana1E-12617510010020 (15)_
AT3G51920.1 11Arabidopsis thaliana3E-1114824520 (0)_
Os02g55880.1 7Oryza sativa1E-9017570889 (9)_
Os05g41210.1 7Oryza sativa2E-06149244641 (41)_
Os03g53200.1 7Oryza sativa7E-0614126490 (0)S
Zm00001eb192150_P001 agpv5Zea mays2E-9317572880 (0)_
GRMZM2G125838_P01 3.21Zea mays2E-9317572881 (1)_
Zm00001eb176900_P001 agpv5Zea mays3E-9317569880 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DHC_N2(1) DUF1825(2) EF-hand_1(4) EF-hand_5(2) EF-hand_6(3) EF-hand_7(2) EF-hand
TargetP: Cytoplasm (Class 2 C0.050; M0.175; S0.104; _0.886)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 175 aa (-cTP 86)
Molecular Weight 20.03 kDA(-cTP )
PI 4.60(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
1125Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1126Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

 15539469(vacuole)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help