PPDB

 The Plant Proteome Database

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AT3G18390.1   CRS1 / YhbY (CRM) domain-containing protein
Lab Annot. unknown protein - CRS1 / YhbY domain (EMB1865)
Mapman: 27.1.1 RNA.processing.splicing
Curated Location plastid nucleoid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G14510.1 11Arabidopsis thaliana1E-15663042626 (6)C
AT4G29750.1 11Arabidopsis thaliana7E-15460242632 (2)C
AT3G01370.1 11Arabidopsis thaliana4E-153720395810 (5)C
Os05g47850.1 7Oryza sativa0705627517 (17)C
Os11g37990.1 7Oryza sativa5E-16057745674 (4)C
Os09g19850.1 7Oryza sativa6E-15962644610 (0)C
Zm00001eb294980_P001 agpv5Zea mays070960740 (0)C
Zm00001eb294980_P002 agpv5Zea mays065161770 (0)C
v1_GRMZM2G025329_P01 4a53Zea mays0519617761 (61)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AATF-Che1(2) CRS1_YhbY(4) DASH_Spc34(2) DNA_pol_phi(1) DUF3295(1) FAD-SLDH(1) Fl
TargetP: Chloroplast (Class 2 C0.921; M0.165; S0.001; _0.020)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position: 69
Length 848 aa (-cTP 792) (-lTP 755)
Molecular Weight 96.00 kDA(-cTP 89.77)(-lTP 85.49)
PI 5.76(-cTP 5.50)(-lTP 5.326)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
326Detail       leaf [A. thaliana] chloroplast stromawild-type
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
873Detail       leaf [A. thaliana] chloroplast stromawild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1392Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
20423899(chloroplast)
19888209(leaves)
19376835(leaf phosphoproteins)
20733066(ABA effected phosphoproteome)
20733066(phosphoproteome-ABA-leaf)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help