PPDB

PPDB	The Plant Proteome Database

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AT3G18110.1 Pentatricopeptide repeat (PPR) superfamily protein

Lab Annot.

Pentatricopeptide repeat (PPR) protein
Mapman: 27.6* RNA.pentatricopeptide (PPR) repeat-containing protein

Curated Location

plastid nucleoid (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT4G31850.1 11 Arabidopsis thaliana 2E-66 834 24 45 10 (8) C
AT5G55840.3 11 Arabidopsis thaliana 2E-65 1024 22 41 0 (0) _
AT5G55840.1 11 Arabidopsis thaliana 3E-65 1024 22 41 0 (0) M
Os06g09880.1 7 Oryza sativa 0 1410 54 71 0 (0) C
Os10g28600.1 7 Oryza sativa 2E-73 937 24 44 0 (0) C
Os02g57800.1 7 Oryza sativa 5E-63 901 23 43 0 (0) _
GRMZM2G053196_P01 3.21 Zea mays 0 1406 54 71 26 (26) C
v1_GRMZM2G053196_P01 4a53 Zea mays 0 1406 54 71 21 (21) C
Zm00001eb373900_P001 agpv5 Zea mays 0 1234 53 71 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Clathrin(4) COX5A(3) DUF3368(4) ECSIT(3) ERAP1_C(1) Exog_C(4) PPR(23) PPR_1(15)
TargetP:	Chloroplast (Class 2 C0.733; M0.022; S0.065; _0.105)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1440 aa (-cTP 1396)
Molecular Weight	162.34 kDA(-cTP 157.71)
PI	6.91(-cTP 6.81)

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1178	Detail								leaf [A. thaliana]	co-IP RH3 stroma	clpr2-1
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

19888209(80S polysomal fraction)
21533090(plasmodesmata-crude)

Comparative Proteomics Data