PPDB

The Plant Proteome Database

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AT3G17970.1   translocon at the outer membrane of chloroplasts 64-III

Lab Annot. TPR protein (homology to Toc64V)
Mapman: 26.33* misc. tetratricopeptide repeat (TPR)
Curated Location envelope-outer (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G17970.2 11Arabidopsis thaliana05401001000 (0)S
AT5G09420.1 11Arabidopsis thaliana059451670 (0)C
AT1G08980.1 11Arabidopsis thaliana9E-1364194767139 (75)_
Os03g50010.1 7Oryza sativa0587597517 (17)M
Os02g51810.1 7Oryza sativa059347640 (0)_
Os02g51810.2 7Oryza sativa2E-13248644610 (0)_
Zm00001eb054500_P003 agpv5Zea mays059058730 (0)M
Zm00001eb054500_P002 agpv5Zea mays059057720 (0)M
v1_GRMZM2G159542_P01 4a53Zea mays059747630 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Amidase(1) DUF2225(1) TPR_1(3) TPR_11(3) TPR_12(2) TPR_14(2) TPR_16(2) TPR_17(2)
TargetP: Secreted (Class 5 C0.018; M0.344; S0.372; _0.154)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon:
TAT position:
Length 589 aa (-cTP 525)
Molecular Weight 64.02 kDA(-cTP )
PI 8.62(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1568Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
19546170(mature pollen grains)
19334764(plasma membrane (cell culture))
19114538(guard cells Arabidopsis leaf)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help