PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G17800.2   alanine-tRNA ligase%2C putative (DUF760)
Lab Annot. DUF760-6
Mapman: 35.2 not assigned.unknown
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G17800.1 11Arabidopsis thaliana04279898257 (36)C
AT1G48450.1 11Arabidopsis thaliana04397081445 (46)C
AT1G48450.2 11Arabidopsis thaliana2E-1403426577198 (24)C
Os03g50870.1 7Oryza sativa6E-15836166754 (4)_
Os04g50860.1 7Oryza sativa9E-10635346670 (0)C
Os11g26890.2 7Oryza sativa2E-5033234540 (0)_
GRMZM2G046849_P01 3.21Zea mays3E-16133870800 (0)C
Zm00001eb055310_P001 agpv5Zea mays3E-16133870800 (0)C
v1_GRMZM2G046849_P01 4a53Zea mays3E-16133870801 (1)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF760(2)
TargetP: Chloroplast (Class 2 C0.925; M0.034; S0.001; _0.181)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 427 aa (-cTP 346)
Molecular Weight 46.69 kDA(-cTP 38.04)
PI 9.23(-cTP 6.04)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1125Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1348Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
2263Detail       leaf [A. thaliana] stroma Clp Clp C1 trap
2267Detail       leaf [A. thaliana] stroma Clp Clp C1 TRAP
2285Detail        [A. thaliana] Clp C1 TRAP
2289Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2305Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help