PPDB

PPDB	The Plant Proteome Database

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AT3G17440.2 Putative plant snare 13

Lab Annot.

NPSN13 (novel plant SNARE 13)
Mapman: 31.4 cell.vesicle transport

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G17440.1 11 Arabidopsis thaliana 1E-154 213 99 99 3 (3) _
AT1G48240.1 11 Arabidopsis thaliana 3E-142 213 91 96 1 (0) _
AT1G48240.2 11 Arabidopsis thaliana 8E-105 161 92 97 0 (0) _
Os03g25390.1 7 Oryza sativa 2E-107 215 71 86 0 (0) _
Os07g44350.1 7 Oryza sativa 8E-102 214 69 85 12 (12) _
Os03g25390.2 7 Oryza sativa 4E-99 254 60 73 0 (0) _
Zm00001eb017970_P001 agpv5 Zea mays 5E-108 215 71 84 0 (0) _
GRMZM2G330650_P01 3.21 Zea mays 5E-108 215 71 84 0 (0) _
v1_GRMZM2G102903_P01 4a53 Zea mays 2E-103 213 69 83 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AKNA(3) Cauli_AT(2) CCDC-167(1) DUF2203(2) DUF5345(3) DUF745(2) DUF948(2) Helo_l
TargetP:	Cytoplasm (Class 3 C0.221; M0.151; S0.042; _0.736)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:	1 TMs
TAT position:
Length	216 aa (-cTP 191)
Molecular Weight	24.54 kDA(-cTP )
PI	6.03(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
1405	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

17317660(Plasma Membrane proteome)
17644812(plasma membrane - suspension cells)
19376835(leaf phosphoproteins)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data