PPDB

The Plant Proteome Database

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AT3G17170.1   Translation elongation factor EF1B/ribosomal protein S6 family protein

Lab Annot. RFC3 - Translation elongation factor EF1B/ribosomal protein S6 protein
Mapman: 29.2.1.1.3.1.6 protein.synthesis.ribosomal protein.prokaryotic.unknown organellar.30S subunit.S6
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os12g37610.1 7Oryza sativa7E-9022058816 (6)M
Zm00001eb136900_P001 agpv5Zea mays8E-8721457780 (0)M
GRMZM2G033653_P01 3.21Zea mays8E-87214577834 (34)M
v1_GRMZM2G033653_P01 4a53Zea mays8E-87214577824 (24)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Ribosomal_S6(1) zf-C4H2(1)
TargetP: Chloroplast (Class 2 C0.877; M0.079; S0.035; _0.109)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 314 aa (-cTP 267) (-lTP 216)
Molecular Weight 36.28 kDA(-cTP 31.16)(-lTP 25.54)
PI 4.51(-cTP 4.37)(-lTP 4.277)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

19995723(chloroplast reference proteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data


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