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AT3G17040.2 high chlorophyll fluorescent 107

Lab Annot.

HCF107 TPR - psbH expression (mbb1 homol, C. reinharditii.)
Mapman: 27.1 RNA.processing; 26.33* misc. tetratricopeptide repeat (TPR)

Curated Location

plastid stroma (Pubmed: 23198870 15918885 18431481 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

PeptideAtlas POGS Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G17040.1 11 Arabidopsis thaliana 0 652 94 94 28 (23) C
AT3G17040.4 11 Arabidopsis thaliana 0 411 100 100 0 (0) C
AT3G17040.3 11 Arabidopsis thaliana 0 445 92 92 0 (0) C
Os03g19560.1 7 Oryza sativa 0 544 64 76 0 (0) C
Os03g19560.2 7 Oryza sativa 4E-122 399 50 64 0 (0) C
Os03g19560.3 7 Oryza sativa 6E-105 229 67 79 0 (0) C
v1_GRMZM2G121960_P01 4a53 Zea mays 0 544 64 76 55 (55) _
GRMZM2G121960_P01 3.21 Zea mays 0 544 64 76 86 (74) _
Zm00001eb014810_P001 agpv5 Zea mays 0 544 64 76 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ANAPC3(5) HemY_N(5) Mad3_BUB1_I(6) SNAP(2) Suf(2) TPR_1(6) TPR_10(7) TPR_11(6) T
TargetP:	Chloroplast (Class 1 C0.904; M0.053; S0.041; _0.072)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	618 aa (-cTP 567)
Molecular Weight	69.83 kDA(-cTP 64.30)
PI	9.06(-cTP 9.13)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1635	Detail								leaf [A. thaliana]	Stroma stroma	clpt1-2
1637	Detail								leaf [A. thaliana]	total leaf tissue stroma	Wild-type
1639	Detail								leaf [A. thaliana]	total leaf tissue stroma	clpt2-1
1640	Detail								leaf [A. thaliana]	total leaf tissue stroma	clpt2-1

* For details about the exprimental sources click here.

Published Proteomics Data

19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data