PPDB

 The Plant Proteome Database

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AT3G17040.1   high chlorophyll fluorescent 107
Lab Annot. HCF107 TPR - psbH expression (mbb1 homol, C. reinharditii.)
Mapman: 27.1 RNA.processing; 26.33* misc. tetratricopeptide repeat (TPR)
Curated Location plastid stroma (Pubmed: 23198870 15918885 18431481 )

TAIR curated location: chloroplast envelope15918885
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G17040.2 11Arabidopsis thaliana0652949421 (16)C
AT3G17040.3 11Arabidopsis thaliana04451001000 (0)C
AT3G17040.4 11Arabidopsis thaliana044592920 (0)C
Os03g19560.1 7Oryza sativa054464760 (0)C
Os03g19560.2 7Oryza sativa8E-12239950640 (0)C
Os03g19560.3 7Oryza sativa1E-10422967790 (0)C
v1_GRMZM2G121960_P01 4a53Zea mays0544647655 (55)_
GRMZM2G121960_P01 3.21Zea mays0544647686 (74)_
Zm00001eb014810_P001 agpv5Zea mays054464760 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: ANAPC3(5) HemY_N(5) Mad3_BUB1_I(6) SNAP(2) Suf(2) TPR_1(6) TPR_10(7) TPR_11(6) T
TargetP: Chloroplast (Class 1 C0.904; M0.056; S0.038; _0.066)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 652 aa (-cTP 584)
Molecular Weight 73.47 kDA(-cTP 66.06)
PI 9.17(-cTP 9.12)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
541Detail       leaf [A. thaliana] stroma (FPLC) >1 MDa stromawild-type
542Detail       leaf [A. thaliana] stroma (FPLC) >500 kDa (HMB) wild-type
875Detail       leaf [A. thaliana] chloroplast stromawild-type
1175Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1635Detail       leaf [A. thaliana] Stroma stromaclpt1-2
1637Detail       leaf [A. thaliana] total leaf tissue stromaWild-type
1639Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1640Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1

* For details about the exprimental sources click here.

Published Proteomics Data

 17151019(vacuole - suspension cell)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data

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