PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G16500.1   phytochrome-associated protein 1

Lab Annot.
Mapman: 27.3.40 RNA.regulation of transcription.Aux/IAA family
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G16500.2 11Arabidopsis thaliana02581001000 (0)_
AT1G51950.1 11Arabidopsis thaliana2E-11627666760 (0)_
AT5G25890.1 11Arabidopsis thaliana1E-3822338520 (0)_
Os02g13520.1 7Oryza sativa8E-6116761740 (0)_
Os05g44810.2 7Oryza sativa1E-5631836540 (0)_
Os05g44810.1 7Oryza sativa1E-5631836540 (0)_
Zm00001eb239550_P001 agpv5Zea mays6E-6122349640 (0)_
v1_GRMZM2G121309_P01 4a53Zea mays6E-6122349640 (0)_
GRMZM2G121309_P01 3.21Zea mays6E-6122349640 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: AUX_IAA(1)
TargetP: Cytoplasm (Class 2 C0.039; M0.232; S0.014; _0.921)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 269 aa (-cTP 250)
Molecular Weight 30.12 kDA(-cTP )
PI 8.58(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help