PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G16290.1   AAA-type ATPase family protein
Lab Annot. FTSHi2, inactive FTSH (likely envelope)
Mapman: 29.5.7.2.4* protein.degradation.metalloprotease.MA(M).M41
Curated Location plastid (Pubmed: 23198870 12185496 18431481 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G50250.1 11Arabidopsis thaliana7E-934723858549 (509)C
AT5G42270.1 11Arabidopsis thaliana2E-914743958986 (900)C
AT2G30950.2 11Arabidopsis thaliana2E-8749138560 (0)C
Os06g45820.1 7Oryza sativa2E-914564158127 (127)C
Os06g51029.1 7Oryza sativa2E-914633859128 (128)C
Os06g51029.2 7Oryza sativa6E-87375436263 (63)C
GRMZM2G126361_P01 3.21Zea mays2E-924633859413 (325)C
GRMZM2G126361_P02 3.21Zea mays2E-924633859413 (325)C
v1_GRMZM2G126361_P01 4a53Zea mays2E-924633859307 (307)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AAA(1) AAA_16(1) AAA_18(1) AAA_2(1) AAA_22(2) AAA_33(1) AAA_5(1) AAA_lid_3(1) DU
TargetP: Chloroplast (Class 3 C0.625; M0.159; S0.019; _0.108)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon: 2 TMs
TAT position:
Length 876 aa (-cTP 844)
Molecular Weight 99.86 kDA(-cTP 96.18)
PI 9.27(-cTP 9.20)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1422Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 2)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1535Detail       leaf [A. thaliana] wild-type
1641Detail       leaf [A. thaliana] total tissue shoot1 mutant
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
1933Detail       leaf [A. thaliana] chloroplast wild-type
1934Detail       leaf [A. thaliana] chloroplast wild-type
1936Detail       leaf [A. thaliana] chloroplast Prep1_Prep2
1983Detail       leaf [A. thaliana] plastid wild-type
1985Detail       leaf [A. thaliana] plastid wild-type
1986Detail       leaf [A. thaliana] plastid Prep1_Prep2
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 12938931(Total chloroplast envelope)
18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21533090(plasmodesmata-crude)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help