PPDB

The Plant Proteome Database

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AT3G16250.1   NDH-dependent cyclic electron flow 1

Lab Annot. NDF4 or NDH-U or PnsB3 - with Fe-S center
Mapman: 1.1.6 PS.lightreaction.NADH DH
Curated Location thylakoid (Pubmed: 23198870 18785996 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G32590.1 11Arabidopsis thaliana3E-2411948675 (4)C
AT4G32590.3 11Arabidopsis thaliana3E-189353705 (4)C
AT4G32590.4 11Arabidopsis thaliana4E-077350655 (4)C
Os07g30670.1 7Oryza sativa5E-68143697924 (24)C
Os07g30670.2 7Oryza sativa5E-43107657624 (24)C
Os05g48160.3 7Oryza sativa1E-2811852700 (0)C
GRMZM2G032253_P01 3.21Zea mays4E-631217182104 (104)C
Zm00001eb321670_P001 agpv5Zea mays4E-6312171820 (0)C
v1_GRMZM2G032253_P01 4a53Zea mays4E-631217182104 (104)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Fer2(1)
TargetP: Chloroplast (Class 2 C0.885; M0.240; S0.015; _0.054)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 204 aa (-cTP 156)
Molecular Weight 22.42 kDA(-cTP 17.15)
PI 8.33(-cTP 5.02)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1674Detail       Rosettes [A. thaliana]  
1675Detail       Rosettes [A. thaliana]  
1676Detail       Rosettes [A. thaliana]  
1677Detail       Rosettes [A. thaliana]  
1679Detail       Rosettes [A. thaliana]  
1745Detail        [A. thaliana] Col-0
1984Detail       leaf [A. thaliana] plastid wild-type
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
19995723(chloroplast reference proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help