PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G16200.1   DNA-directed RNA polymerase subunit beta

Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os01g31220.1 7Oryza sativa033382910 (0)C
Os01g31220.2 7Oryza sativa028880900 (0)_
Zm00001eb270670_P003 agpv5Zea mays040870810 (0)_
Zm00001eb270670_P002 agpv5Zea mays040870810 (0)_
GRMZM2G063899_P01 3.21Zea mays040870810 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM:
TargetP: Cytoplasm (Class 5 C0.156; M0.277; S0.012; _0.470)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 456 aa (-cTP 416)
Molecular Weight 52.16 kDA(-cTP )
PI 8.52(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

16618929(Golgi)
19546170(mature pollen grains)
19253305(phosphoproteins (etiolated seedling))
20733066(phosphoproteome-ABA-leaf)
22430844(Golgi-cell-culture)
21768351(Leaf-Phosphoproteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help