PPDB

The Plant Proteome Database

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AT3G16190.1   Isochorismatase family protein

Lab Annot. isochorismatase hydrolase protein
Mapman: 18.13 Co-factor and vitamine metabolism.isochorismatase
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G23230.1 11Arabidopsis thaliana3E-0918527420 (0)_
AT5G23220.1 11Arabidopsis thaliana7E-0918527420 (0)C
Os02g17620.1 7Oryza sativa9E-8419163770 (0)_
Os02g17640.1 7Oryza sativa2E-8319065770 (0)S
v1_GRMZM2G049021_P01 4a53Zea mays1E-7919265784 (4)S
GRMZM2G049021_P01 3.21Zea mays1E-7919265787 (7)S
v1_GRMZM2G049021_P02 4a53Zea mays1E-7719265784 (4)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Isochorismatase(1)
TargetP: Cytoplasm (Class 2 C0.105; M0.153; S0.099; _0.804)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 196 aa (-cTP 175)
Molecular Weight 21.86 kDA(-cTP )
PI 5.75(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2249Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help