PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT3G16090.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G65040.2 11 Arabidopsis thaliana 0 495 71 82 0 (0) S
AT1G65040.4 11 Arabidopsis thaliana 0 495 68 78 0 (0) S
AT1G65040.3 11 Arabidopsis thaliana 2E-177 415 63 74 0 (0) S
Os06g19680.2 7 Oryza sativa 0 509 60 72 0 (0) S
Os06g19680.1 7 Oryza sativa 0 509 60 72 0 (0) S
Os07g30100.1 7 Oryza sativa 7E-25 435 26 43 0 (0) S
Zm00001eb197180_P004 agpv5 Zea mays 0 508 59 74 0 (0) S
GRMZM2G028183_P01 3.21 Zea mays 0 455 63 76 4 (4) M
v1_GRMZM2G028183_P01 4a53 Zea mays 0 455 63 76 2 (2) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DZR(1) FANCL_C(1) PhoR(2) Prok-RING_4(1) RINGv(1) zf-ANAPC11(1) zf-C3HC4(1) zf-C
TargetP:	Secreted (Class 3 C0.001; M0.299; S0.812; _0.067)
Predotar:
Subcel. Location:
TM-HMM prediction:	6 TMs
Aramemnon:	5 TMs
TAT position:
Length	492 aa (-cTP 422)
Molecular Weight	56.04 kDA(-cTP )
PI	7.68(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

19334764(plasma membrane (cell culture))

Comparative Proteomics Data