PPDB

The Plant Proteome Database

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AT3G15970.1   NUP50 (Nucleoporin 50 kDa) protein

Lab Annot. Nucleoporin Nup50b
Mapman: 29.3.1 protein.targeting.nucleus
Curated Location nucleus (Pubmed: 21189294 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G15970.2 11Arabidopsis thaliana04651001000 (0)_
AT1G52380.2 11Arabidopsis thaliana1E-15247956690 (0)_
AT1G52380.1 11Arabidopsis thaliana1E-152479566914 (3)_
Os05g28190.1 7Oryza sativa3E-86503415731 (31)_
v1_GRMZM2G157317_P01 4a53Zea mays1E-7448041556 (6)_
GRMZM2G157317_P01 3.21Zea mays1E-7448041556 (6)_
Zm00001eb155830_P002 agpv5Zea mays1E-7448041550 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: NUP50(2) Ran_BP1(1)
TargetP: Cytoplasm (Class 2 C0.193; M0.075; S0.031; _0.813)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 465 aa (-cTP 377)
Molecular Weight 49.11 kDA(-cTP )
PI 4.74(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

20706207(cell cycle interactome (cell culture))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help