PPDB

PPDB	The Plant Proteome Database

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AT3G15720.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

TAIR curated location: cell wall (sensu Magnoliophyta) & anchored to membrane12068095,12805588,16287169

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G15720.3 11 Arabidopsis thaliana 0 454 100 100 0 (0) S
AT3G15720.2 11 Arabidopsis thaliana 0 454 99 99 0 (0) S
AT3G15720.4 11 Arabidopsis thaliana 0 392 100 100 0 (0) _
Os05g46510.1 7 Oryza sativa 4E-93 391 39 55 0 (0) S
Os07g10740.1 7 Oryza sativa 1E-90 397 39 53 0 (0) S
Os07g10680.1 7 Oryza sativa 7E-90 364 43 57 0 (0) S
GRMZM2G004500_P01 3.21 Zea mays 8E-93 388 40 57 0 (0) S
Zm00001eb061830_P001 agpv5 Zea mays 8E-93 388 40 57 0 (0) S
v1_GRMZM2G004500_P01 4a53 Zea mays 8E-93 388 40 57 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(2) End_N_terminal(1) Glyco_hydro_28(1) Pectate_lyase_3(2)
TargetP:	Secreted (Class 1 C0.002; M0.034; S0.993; _0.032)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	456 aa (-cTP 405)
Molecular Weight	49.30 kDA(-cTP )
PI	5.36(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

14517339(GPI anchored suspension cells)
WallDB-E.Jamet(cell wall reference proteome)

Comparative Proteomics Data