PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G15020.1   Lactate/malate dehydrogenase family protein
Lab Annot. mitochondrial malate dehydrogenase [NAD] mMDH2
Mapman: 8.1.9 TCA / org.transformation.TCA.malate DH
Curated Location mitochondria (Pubmed: 26946085 )

TAIR curated location: mitochondrion14671022
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G53240.1 11Arabidopsis thaliana03418895982 (577)M
AT3G15020.2 11Arabidopsis thaliana03019999145 (92)M
AT2G22780.1 11Arabidopsis thaliana1E-1493146778187 (128)_
Os01g46070.1 7Oryza sativa0341839076 (76)M
Os05g49880.1 7Oryza sativa0341808986 (86)M
Os12g43630.1 7Oryza sativa4E-15333565770 (0)_
Zm00001eb296550_P001 agpv5Zea mays032783910 (0)M
Zm00001eb344340_P001 agpv5Zea mays034979860 (0)M
v1_GRMZM2G466833_P01 4a53Zea mays0341839082 (81)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: 3Beta_HSD(1) DapB_N(1) Ldh_1_C(1) Ldh_1_N(1) THF_DHG_CYH_C(2)
TargetP: Mitochondria (Class 3 C0.143; M0.699; S0.016; _0.079)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 341 aa (-cTP 333)
Molecular Weight 35.88 kDA(-cTP )
PI 8.30(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
26Detail       leaf [A. thaliana] plastid thylakoid membranewild-type
94Detail       root [B. rapa] plastid stroma 
99Detail       petal [B. oleracea] plastid stroma 
102Detail       petal [B. oleracea] plastid stromaAlboglabra
119Detail       root [B. rapa] plastid stroma 
245Detail       leaf [A. thaliana] total leaf tissue wild-type
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
339Detail       leaf [A. thaliana] chloroplast stromawild-type
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
351Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
355Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
356Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
771Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (rep. 1 - 5ug)
872Detail       leaf [A. thaliana] chloroplast plastoglobulewild-type (1-8); k2k3 (9-10)
874Detail       leaf [A. thaliana] chloroplast stromawild-type
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
877Detail       leaf [A. thaliana] chloroplast stromawild-type
1202Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1207Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1208Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1413Detail       leaf [A. thaliana] total leaf tissue -114 rep1tR1 wild-type
1414Detail       leaf [A. thaliana] total leaf tissue -114 rep1tR2 wild-type
1415Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.1 clpr2-1
1416Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.2 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1457Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1460Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 3)
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1540Detail       leaf [A. thaliana] Thylakoids plastoglobulewild-type
1541Detail       leaf [A. thaliana] Thylakoids plastoglobuleM-48
1542Detail       leaf [A. thaliana] wild-type
1596Detail        [A. thaliana]  
1745Detail        [A. thaliana] Col-0
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1944Detail       leaf [A. thaliana] stroma UVR stromaUVR
1946Detail       leaf [A. thaliana] stroma UVR stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1984Detail       leaf [A. thaliana] plastid wild-type
1985Detail       leaf [A. thaliana] plastid wild-type
1987Detail       leaf [A. thaliana] plastid Prep1_Prep2
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2
2003Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2004Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2005Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2007Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2167Detail       leaf [A. thaliana] stroma Clp stromaP3 trap-strepII
2192Detail        [A. thaliana] total soluble P3-trap-strepII 16
2209Detail       leaf [A. thaliana] total leaf tissue Clp P5 Trapst 10
2210Detail       leaf [A. thaliana] total leaf tissue Clp P5 strepII st28
2211Detail       leaf [A. thaliana] total leaf tissue Clp P5 Trapst 12
2216Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2223Detail       Total soluble [A. thaliana] Total soluble proteins cGEP strep
2225Detail       leaf [A. thaliana] total leaf tissue Clp P3 trap
2245Detail       seedlings [A. thaliana] total tissue wild-type
2247Detail       seedlings [A. thaliana] total tissue atg5
2249Detail       seedlings [A. thaliana] total tissue gfs9
2250Detail       seedlings [A. thaliana] total tissue atg5
2253Detail       seedlings [A. thaliana] total tissue atg5
2291Detail        [A. thaliana] Clp C1 TRAP
2298Detail        [A. thaliana] Clp C1 WT
2307Detail        [A. thaliana] Clp C1 TRAP
2400Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1TRAPSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 MitoDB(Mitochondrial proteome)
15815986(Silique)
15815986(seedling)
15815986(Leaf)
15052571(soluble leaf)
18538804(apoplast)
17828791(total leaf)
17028151(leaf defense proteome)
17432890(leaf total membranes)
18463617(suspension cells-phosphorylated proteins)
18814325(cotyledons)
19200160(flower-stage 12)
18796151(cell wall (hypocotyl))
19525416(leaf (wt and clpr4-1 mutant))
20018591(weak Cu-2+ binding (mitochondria - cell culture))
20706207(contaminants cell cycle interactome (cell culture))
19114538(guard cells Arabidopsis leaf)
19508356(mature pollen grains and pollen tubes)
21311031(mitochondria)
21841088(mitochondria (2DE native gel))
21173025(root proteome)
21472856(mitochondrial-2DEgels-uncurated)
21472856(mitochondria-LC-MS/MS-uncurated)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)
21515685(GreenCut2)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help