PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G15010.1   RNA-binding (RRM/RBD/RNP motifs) family protein
Lab Annot. RNA recognition motif (RRM)-containing protein
Mapman: 27.4 RNA.RNA binding
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G15010.2 11Arabidopsis thaliana040410010041 (28)_
AT2G41060.3 11Arabidopsis thaliana5E-5821845620 (0)_
AT2G41060.1 11Arabidopsis thaliana5E-5821845620 (0)_
Os01g42820.2 7Oryza sativa2E-80249557018 (18)_
Os01g42820.1 7Oryza sativa2E-80249557018 (18)_
Os01g42820.3 7Oryza sativa2E-8024955708 (8)_
Zm00001eb358100_P001 agpv5Zea mays3E-9637149610 (0)_
Zm00001eb358100_P003 agpv5Zea mays3E-9637149610 (0)_
Zm00001eb358100_P002 agpv5Zea mays2E-9530654670 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: RRM_1(2) RRM_7(2)
TargetP: Cytoplasm (Class 2 C0.108; M0.168; S0.041; _0.875)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 404 aa (-cTP 376)
Molecular Weight 41.78 kDA(-cTP )
PI 8.37(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1907Detail       leaf [A. thaliana] total leaf tissue Col_0
1908Detail       leaf [A. thaliana] total leaf tissue clb19_myc
1909Detail       leaf [A. thaliana] total leaf tissue Col_0
1910Detail       leaf [A. thaliana] total leaf tissue clb19_myc
1911Detail       leaf [A. thaliana] total leaf tissue Col_0
1912Detail       leaf [A. thaliana] total leaf tissue clb19_myc
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2224Detail       leaf [A. thaliana] total leaf tissue Clp P3 strep
2248Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 15496452(nucleolus)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help