PPDB

 The Plant Proteome Database

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AT3G15000.1   cobalt ion binding protein
Lab Annot. RIP1 - mitochondria & plastid
Mapman: 27.1.5* RNA.processing.editing
Curated Location mitochondria (Pubmed: 23198870 22566615 ) (supported by in-house exprements)
plastid (Pubmed: 23198870 22566615 ) (supported by in-house exprements)

TAIR curated location: mitochondrion14671022,11743114
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G06790.2 11Arabidopsis thaliana8E-5416456730 (0)C
AT3G06790.1 11Arabidopsis thaliana9E-5316455730 (0)C
AT1G53260.1 11Arabidopsis thaliana2E-4924254590 (0)S
Os09g04670.1 7Oryza sativa1E-103249677512 (12)M
Os09g33480.1 7Oryza sativa1E-10217883908 (8)C
Os03g38490.1 7Oryza sativa1E-5212264837 (7)M
Zm00001eb401990_P001 agpv5Zea mays1E-8527061710 (0)M
GRMZM2G169384_P01 3.21Zea mays1E-85270617169 (68)M
GRMZM2G054537_P01 3.21Zea mays3E-5312465835 (5)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Cytadhesin_P30(1) Drf_FH1(1) Extensin_2(1)
TargetP: Chloroplast (Class 2 C0.914; M0.128; S0.001; _0.012)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 395 aa (-cTP 339)
Molecular Weight 42.87 kDA(-cTP 36.87)
PI 9.38(-cTP 7.90)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
324Detail       leaf [A. thaliana] cell wall enriched wild-type
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
420Detail       leaf [A. thaliana] chloroplast stromaclpR1-stop (EMS)
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
1114Detail        [A. thaliana] RARE1 co-IP rare-1
1197Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1397Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1507Detail        [A. thaliana] wild-type
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
1569Detail       leaf [A. thaliana] TiO2 thylakoid membranek1k3
1572Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1712Detail       Rosettes [A. thaliana] Thylakoids thylakoid membraneWild-type
1714Detail       Rosettes [A. thaliana] Thylakoids thylakoid membranek1k3
1719Detail        [A. thaliana]  
1720Detail        [A. thaliana]  
1931Detail       leaf [A. thaliana] total leaf tissue DXS_Flag
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2216Detail       leaf [A. thaliana] total leaf tissue Clp P5 st
2236Detail       seedlings [A. thaliana] total tissue gfs9
2237Detail       seedlings [A. thaliana] total tissue gfs9
2238Detail       seedlings [A. thaliana] total tissue gfs9
2239Detail       seedlings [A. thaliana] total tissue gfs9
2241Detail       seedlings [A. thaliana] total tissue gfs9
2242Detail       seedlings [A. thaliana] total tissue gfs9
2245Detail       seedlings [A. thaliana] total tissue wild-type
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2254Detail       leaf [A. thaliana] total seedlings gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2266Detail       leaf [A. thaliana] stroma Clp Clp C1 wild-type
2273Detail       seedlings [A. thaliana] total tissue wild-type
2287Detail        [A. thaliana] Clp C1 WT
2288Detail        [A. thaliana] Clp C1 WT
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2303Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP
2321Detail       leaf [A. thaliana]  

* For details about the exprimental sources click here.

Published Proteomics Data

 MitoDB(Mitochondrial proteome)
15276431(Mitochondrial proteome)
15276431(mitochondrial membranes-suspension cells)
18931141(peroxisomes- high&low purity (cell culture))
18931141(peroxisomes-high purity (cell culture))
19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))
20018591(Co2+ binding (mitochondria - cell culture))
19995723(chloroplast reference proteome)
21533090(plasmodesmata-crude)
21311031(mitochondria)
21841088(mitochondria (2DE native gel))
21173025(root proteome)
21472856(mitochondrial-2DEgels-uncurated)
21472856(mitochondria-LC-MS/MS-uncurated)
21472856(mitochondrial-reference-proteome-Millar-Nov2011)

Comparative Proteomics Data

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