PPDB

PPDB	The Plant Proteome Database

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AT3G14100.1 RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot.

RNA-binding (RRM/RBD/RNP motifs) protein
Mapman: 27.4 RNA.RNA binding

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G54080.1 11 Arabidopsis thaliana 0 408 83 90 13 (7) M
AT1G54080.2 11 Arabidopsis thaliana 0 412 83 89 13 (7) M
AT1G17370.1 11 Arabidopsis thaliana 0 400 81 90 17 (9) M
Os07g42380.1 7 Oryza sativa 0 388 70 81 0 (0) M
Os11g40510.1 7 Oryza sativa 0 385 68 79 0 (0) M
Os11g40510.2 7 Oryza sativa 0 382 68 79 0 (0) M
Zm00001eb166710_P001 agpv5 Zea mays 0 407 69 79 0 (0) M
GRMZM5G835213_P02 3.21 Zea mays 0 407 69 79 0 (0) M
Zm00001eb166710_P002 agpv5 Zea mays 0 398 69 79 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Cas_Cas2CT1978(3) DUF4799(2) PHM7_cyt(3) RRM_1(3) RRM_5(2) RRM_7(3) RRM_occluded
TargetP:	Mitochondria (Class 2 C0.056; M0.853; S0.005; _0.182)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	427 aa (-cTP 368)
Molecular Weight	47.09 kDA(-cTP )
PI	7.22(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2182	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2183	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2184	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2185	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2247	Detail								seedlings [A. thaliana]	total tissue	atg5
2291	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19200160(flower-stage 12)
19546170(mature pollen grains)
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data