PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G14010.1   CTC-interacting domain 4

Lab Annot. CTC-interacting domain 4
Mapman: 35.1.41 not assigned.no ontology.hydroxyproline rich proteins
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G14010.5 11Arabidopsis thaliana05951001000 (0)C
AT3G14010.3 11Arabidopsis thaliana05951001006 (2)C
AT3G14010.2 11Arabidopsis thaliana05951001006 (2)C
Os02g27950.2 7Oryza sativa2E-107630405330 (30)C
Os02g27950.1 7Oryza sativa1E-106630405330 (30)C
Os04g53450.1 7Oryza sativa9E-129337580 (0)C
Zm00001eb241130_P003 agpv5Zea mays6E-11362340540 (0)C
Zm00001eb241130_P002 agpv5Zea mays1E-11262640530 (0)C
GRMZM5G829738_P01 3.21Zea mays1E-11262640531 (1)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: LsmAD(2) PAM2(2) SM-ATX(1)
TargetP: Chloroplast (Class 5 C0.684; M0.085; S0.045; _0.525)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 595 aa (-cTP 578)
Molecular Weight 65.71 kDA(-cTP 63.86)
PI 6.44(-cTP 6.18)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1541Detail       leaf [A. thaliana] Thylakoids plastoglobuleM-48

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19376835(leaf phosphoproteins)
21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help