PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G13772.1   transmembrane nine 7

Lab Annot. endomembrane protein 70
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G55130.1 11Arabidopsis thaliana063291960 (0)S
AT5G25100.1 11Arabidopsis thaliana0626758639 (36)S
AT5G10840.1 11Arabidopsis thaliana0631758643 (40)S
Os06g37160.1 7Oryza sativa0616798918 (18)M
Os09g38530.1 7Oryza sativa0616748551 (51)S
Os06g44140.1 7Oryza sativa062271830 (0)S
GRMZM2G146951_P01 3.21Zea mays0618748514 (14)S
v1_GRMZM2G146951_P01 4a53Zea mays0618748510 (9)S
Zm00001eb412370_P001 agpv5Zea mays061874850 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CopD(3) EMP70(1) MFS_1(1) Shisa(2)
TargetP: Secreted (Class 3 C0.001; M0.345; S0.941; _0.009)
Predotar:
Subcel. Location:
TM-HMM prediction: 10 TMs
Aramemnon:
TAT position:
Length 641 aa (-cTP 594)
Molecular Weight 74.23 kDA(-cTP )
PI 8.70(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1766Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

16618929(Golgi)
17151019(vacuole - suspension cell)
17660356(tonoplast (Brassica oleracea buds))
19200160(flower-stage 12)
19546170(mature pollen grains)
19334764(plasma membrane (cell culture))
19114538(guard cells Arabidopsis leaf)
22430844(Golgi-cell-culture)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help