PPDB

 The Plant Proteome Database

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AT3G13740.1   Ribonuclease III family protein
Lab Annot. Ribonuclease III protein
Mapman: 35.1 not assigned.no ontology
Curated Location plastid (Pubmed: 23198870 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G13740.3 11Arabidopsis thaliana1E-175242991000 (0)C
AT3G13740.6 11Arabidopsis thaliana6E-139192991000 (0)C
AT3G13740.2 11Arabidopsis thaliana6E-12517210010035 (19)_
Os11g13420.1 7Oryza sativa1E-7317064819 (9)C
Os05g25400.1 7Oryza sativa2E-7317064809 (9)C
Os11g13420.3 7Oryza sativa2E-7115067864 (4)M
Zm00001eb120860_P001 agpv5Zea mays2E-7017061790 (0)C
GRMZM2G445057_P03 3.21Zea mays2E-70170617965 (55)C
v1_GRMZM2G445057_P05 4a53Zea mays2E-55138627822 (22)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Ribonucleas_3_3(1) Ribonuclease_3(1)
TargetP: Chloroplast (Class 3 C0.723; M0.109; S0.023; _0.143)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 247 aa (-cTP 192) (-lTP 146)
Molecular Weight 27.68 kDA(-cTP 21.95)(-lTP 16.82)
PI 9.04(-cTP 6.02)(-lTP 6.873)

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
451Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1208Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1395Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1415Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.1 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
2300Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))

Comparative Proteomics Data

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