PPDB

PPDB	The Plant Proteome Database

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AT3G13570.1 SC35-like splicing factor 30A

Lab Annot.

SCL30a (SC35-like splicing factor 30a); RNA binding
Mapman: 27.1.1 RNA.processing.splicing

Curated Location

nucleus (Pubmed: 15133128 )

TAIR curated location: nuclear speck15133128

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G55310.5 11 Arabidopsis thaliana 5E-90 216 74 80 0 (0) C
AT1G55310.2 11 Arabidopsis thaliana 5E-90 216 74 80 0 (0) C
AT1G55310.1 11 Arabidopsis thaliana 1E-87 213 74 80 0 (0) C
Os03g25770.1 7 Oryza sativa 8E-57 129 77 86 0 (0) M
Os03g25770.2 7 Oryza sativa 9E-57 129 77 86 0 (0) M
Os07g43950.1 7 Oryza sativa 2E-54 135 68 79 0 (0) C
v1_GRMZM2G060594_P05 4a53 Zea mays 6E-64 210 60 68 9 (9) M
Zm00001eb328450_P009 agpv5 Zea mays 6E-64 210 60 68 0 (0) M
Zm00001eb328450_P006 agpv5 Zea mays 6E-64 210 60 68 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Nup35_RRM_2(1) RRM_1(1)
TargetP:	Chloroplast (Class 4 C0.702; M0.490; S0.014; _0.080)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	262 aa (-cTP 260)
Molecular Weight	30.23 kDA(-cTP 29.94)
PI	11.68(-cTP 11.65)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
2248	Detail								seedlings [A. thaliana]	total tissue	wild-type
2251	Detail								seedlings [A. thaliana]	total tissue	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

16807317(Phosphoproteins)
18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19253305(phosphoproteins (etiolated seedling))
19334764(plasma membrane (cell culture))
19376835(leaf phosphoproteins)
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data