PPDB

 The Plant Proteome Database

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AT3G13235.1   ubiquitin family protein
Lab Annot. ubiquitin protein
Mapman: 29.5.11.1 protein.degradation.ubiquitin.ubiquitin
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G13235.2 11Arabidopsis thaliana041410010043 (13)_
AT3G13235.3 11Arabidopsis thaliana0414999942 (13)_
Os02g10510.1 7Oryza sativa0422698124 (24)_
Os02g33910.1 7Oryza sativa3E-0619927440 (0)_
Zm00001eb205890_P003 agpv5Zea mays041470800 (0)_
GRMZM2G049839_P02 3.21Zea mays0414708085 (30)_
v1_GRMZM2G049839_P01 4a53Zea mays0414708029 (29)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Asp_protease(1) Asp_protease_2(1) gag-asp_proteas(1) Rad60-SLD(1) RVP(1) RVP_2(1
TargetP: Cytoplasm (Class 2 C0.115; M0.133; S0.054; _0.815)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 414 aa (-cTP 347)
Molecular Weight 45.36 kDA(-cTP )
PI 4.83(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
622Detail       leaf [A. thaliana] total leaf tissue wild-type
1207Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1208Detail       leaf [A. thaliana] total leaf tissue clpp3 null
1333Detail       leaf [A. thaliana] total tissue - Low-mass range wild-type
1334Detail       leaf [A. thaliana] total tissue - low mass region clpt1xclpt2
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2183Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2245Detail       seedlings [A. thaliana] total tissue wild-type
2248Detail       seedlings [A. thaliana] total tissue wild-type
2250Detail       seedlings [A. thaliana] total tissue atg5
2251Detail       seedlings [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 16358359(cell suspension (M&Skoog))
16502469(cell suspension-Cd-up)
18463617(suspension cells-phosphorylated proteins)
19200160(flower-stage 12)
19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19888209(leaves)
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help