PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT3G13224.2 RNA-binding (RRM/RBD/RNP motifs) family protein

Lab Annot.

RNA recognition motif (RRM)-containing protein
Mapman: 27.4 RNA.RNA binding

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G13224.3 11 Arabidopsis thaliana 0 339 100 100 0 (0) _
AT3G13224.1 11 Arabidopsis thaliana 3E-129 184 98 98 2 (1) _
AT5G40490.1 11 Arabidopsis thaliana 6E-78 181 67 83 27 (7) _
Os08g38410.3 7 Oryza sativa 2E-94 351 52 62 0 (0) _
Os08g23120.1 7 Oryza sativa 1E-93 277 61 70 4 (4) _
Os08g38410.1 7 Oryza sativa 2E-72 157 68 84 0 (0) _
Zm00001eb028170_P001 agpv5 Zea mays 4E-102 274 62 73 0 (0) _
GRMZM2G152526_P01 3.21 Zea mays 4E-102 274 62 73 27 (27) _
Zm00001eb199330_P003 agpv5 Zea mays 3E-95 236 62 75 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	BRAP2(1) NID(2) Nup35_RRM(3) Nup35_RRM_2(2) OB_RNB(2) PHM7_cyt(3) RRM_1(2) RRM_7
TargetP:	Cytoplasm (Class 2 C0.070; M0.253; S0.086; _0.853)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	358 aa (-cTP 306)
Molecular Weight	37.86 kDA(-cTP )
PI	8.85(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19525416(leaf (wt and clpr4-1 mutant))
19253305(phosphoproteins (etiolated seedling))
19376835(leaf phosphoproteins)
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data